Complete Genome Sequence of Halomonas venusta Type Strain DSM 4743, a Moderately Halophilic Marine Bacterium.

Here, we report the genome sequence of Halomonas venusta strain DSM 4743T, a moderately halophilic marine bacterium. This type species genome consists of a 4.3-Mb chromosome, with 3,777 protein-coding genes, 60 tRNA loci, and 6 complete rRNA operons, plus a 6.1-kb plasmid termed p4743-A.

Suppressed immune microenvironment and repertoire in brain metastases from patients with resected non-small-cell lung cancer.

BACKGROUND: The tumor immune microenvironment (TIME) of lung cancer brain metastasis is largely unexplored. We carried out immune profiling and sequencing analysis of paired resected primary tumors and brain metastases of non-small-cell lung carcinoma (NSCLC). PATIENTS AND METHODS: TIME profiling of archival formalin-fixed and paraffin-embedded specimens of paired primary tumors and brain metastases from 39 patients with surgically resected NSCLCs was carried out using a 770 immune gene expression panel and by T-cell receptor beta repertoire (TCRß) sequencing. Immunohistochemistry was carried out for validation. Targeted sequencing was carried out to catalog hot spot mutations in cancer genes. RESULTS: Somatic hot spot mutations were mostly shared between both tumor sites (28/39 patients; 71%). We identified 161 differentially expressed genes, indicating inhibition of dendritic cell maturation, Th1, and leukocyte extravasation signaling pathways, in brain metastases compared with primary tumors (P < 0.01). The proinflammatory cell adhesion molecule vascular cell adhesion protein 1 was significantly suppressed in brain metastases compared with primary tumors. Brain metastases exhibited lower T cell and elevated macrophage infiltration compared with primary tumors (P < 0.001). T-cell clones were expanded in 64% of brain metastases compared with their corresponding primary tumors. Furthermore, while TCR repertoires were largely shared between paired brain metastases and primary tumors, T-cell densities were sparse in the metastases. CONCLUSION: We present findings that suggest that the TIME in brain metastases from NSCLC is immunosuppressed and comprises immune phenotypes (e.g. immunosuppressive tumor-associated macrophages) that may help guide immunotherapeutic strategies for NSCLC brain metastases.

Association between an ectoparasitic copepod (Caligus sp.) and the monogenean Udonella cf. caligorum Johnston 1835 on a catfish population.

We analysed the association between a monogenean (Udonella cf. caligorum Johnston 1835) and its copepod host (Caligus sp.) living on a wild population of Arius herzbergii Bloch, 1794 in a north-eastern coastal lagoon from Venezuela. This study characterized infestation levels and analysed the effects of monogeneans on the fecundity and hatching success of the copepod host, as well as damage to its egg capsules and genital complex. A total of 218 Caligus specimens were analysed (94 males, 110 females and 14 immature stages) in which a total of 1017 monogeneans were found. These included 311 mature stages and 706 egg capsules. Monogenean stages were found attached to the cephalothorax, abdomen, genital complex and egg capsules of the copepods. No significant differences were found in fecundity and egg hatching when infested and non-infested ovigerous females were compared. No damage was observed on egg capsules or genital areas of infested ovigerous females. Our results suggest that this association, at the level of prevalence and intensity observed, is closer to commensalism than parasitism. The importance of considering that the nature of interaction is dynamic and changing with environmental conditions and time scale is highlighted.

Bacterial sulfate production by biodesulfurization of aromatic hydrocarbons, determined by ion chromatography.

The use of bacteria to remove sulfur from crude oil or petroleum distillates is a novel concept that presents an alternative biotechnology to the current technology of hydrodesulfurization (HDS). Sulfur must be removed from crude oils prior use. The burning of fossil fuels containing sulfur releases sulfur dioxide into the atmosphere causing acid rain. The aim of this work is to determine the sulfate concentration by ion chromatography (IC), and calculate the percentage of transformation of organic bound sulfur, that is converted to sulfate, and estimate the efficiency of bacteria in desulfurization. IC is a suitable method for sulfate concentration determination. However, when chloride concentrations are significantly high, interference of the sulfate signal does occur. In this case, it could be avoided by diluting samples. A Dionex Model 2000i/SP IC system, with an anionic pre-column (Dionex AG4A), an anion separator column (Dionex AS4A), a suppressor column (Dionex AMMS-II), and a conductivity detector was used. The eluent (21 mM NaOH) and regenerant (electrolyzed 18 M omega/cm water) flow-rates were 1.0 and 2.0 ml/min, respectively. The sample loop volume was 10 microliters and the conductivity sensitivity was 30 muS. The diluted samples were filtered through a 0.45-micron filter before injection. The highest sulfate concentration detected was 24.10 mg/l, corresponding to a maximal conversion rate of 10% in a month. Sulfate ions were not detected in control samples. The correlation coefficient for a linear least squares fit was 0.99 (p < 0.001). The minimal concentration that we can read was 0.02 mg/l and this concentration corresponded to the limit of detection obtained under the conditions employed in this study. IC is an economical, sensitive and accurate way to estimate the sulfate concentrations in microbiological samples.